{
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  "Package": "evoTS",
  "Title": "Analyses of Evolutionary Time-Series",
  "Version": "1.0.3",
  "Authors@R": "person(given = \"Kjetil Lysne\",\nfamily = \"Voje\",\nrole = c(\"aut\", \"cre\"),\nemail = \"k.l.voje@nhm.uio.no\")",
  "Description": "Facilitates univariate and multivariate analysis of\nevolutionary sequences of phenotypic change. The package\nextends the modeling framework available in the 'paleoTS'\npackage. Please see <https://klvoje.github.io/evoTS/index.html>\nfor information about the package and the implemented models.",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "Maintainer": "Kjetil Lysne Voje <k.l.voje@nhm.uio.no>",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.1",
  "URL": "https://klvoje.github.io/evoTS/index.html",
  "BugReports": "https://github.com/klvoje/evoTS/issues",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev",
  "Repository": "https://klvoje.r-universe.dev",
  "Date/Publication": "2024-06-28 07:26:42 UTC",
  "RemoteUrl": "https://github.com/klvoje/evots",
  "RemoteRef": "HEAD",
  "RemoteSha": "651458ccd4b940053f9257e3c18a4110b0c2d4db",
  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "Author": "Kjetil Lysne Voje [aut, cre]",
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  "_user": "klvoje",
  "_type": "src",
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  "_created": "2026-05-18T07:42:33.000Z",
  "_published": "2026-06-02T16:27:35.265Z",
  "_distro": "noble",
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    "author": "klvoje <k.l.voje@gmail.com>",
    "committer": "klvoje <k.l.voje@gmail.com>",
    "message": "Update of webpage\n",
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  "_contributors": [
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      "uuid": 35102014
    }
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    "name": "Kjetil Lysne Voje",
    "description": "Evolutionary biologists at the Natural History Museum, University of Oslo."
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    "extra/contents.json",
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    "extra/readme.md",
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  "_realowner": "klvoje",
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      "date": "2023-03-06"
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      "date": "2024-06-20"
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    "fit.multivariate.OU.user.defined",
    "fit.multivariate.URW",
    "fit.multivariate.URW.shift",
    "loglik.surface.accel",
    "loglik.surface.decel",
    "loglik.surface.GRW",
    "loglik.surface.OU",
    "loglik.surface.OUBM",
    "loglik.surface.stasis",
    "loglik.surface.URW",
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    "opt.accel.single.R.zero.corr",
    "opt.decel.single.R",
    "opt.decel.single.R.zero.corr",
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    "opt.joint.decel",
    "opt.joint.OUBM",
    "opt.single.R",
    "opt.single.R.zero.corr",
    "plotevoTS",
    "plotevoTS.multivariate",
    "sim.accel.decel",
    "sim.multi.OU",
    "sim.multi.URW",
    "sim.OUBM"
  ],
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    {
      "name": "diameter_S.yellowstonensis",
      "title": "Evolutionary sequence (time-series) of phenotypic change in diameter in the lineage Stephanodiscus yellowstonensis",
      "object": "diameter_S.yellowstonensis",
      "class": [
        "paleoTS"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ribs_S.yellowstonensis",
      "title": "Evolutionary sequence (time-series) of phenotypic change in the number of ribs in the lineage Stephanodiscus yellowstonensis",
      "object": "ribs_S.yellowstonensis",
      "class": [
        "paleoTS"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
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      "page": "as.evoTS.multi.BW.acceldecel.fit",
      "title": "Class for fit to evolutionary sequence (time-series) models",
      "topics": [
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      ]
    },
    {
      "page": "as.evoTS.multi.BW.fit",
      "title": "Class for fit to evolutionary sequence (time-series) models",
      "topics": [
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      ]
    },
    {
      "page": "as.evoTS.multi.OU.fit",
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      "topics": [
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      ]
    },
    {
      "page": "as.evoTS.multi.URW.fit",
      "title": "Class for fit to evolutionary sequence (time-series) models",
      "topics": [
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      ]
    },
    {
      "page": "as.evoTS.multi.URW.shift.fit",
      "title": "Class for fit to evolutionary sequence (time-series) models",
      "topics": [
        "as.evoTS.multi.URW.shift.fit"
      ]
    },
    {
      "page": "as.evoTSfit.OUBM",
      "title": "Class for fit to evolutionary sequence (time-series) models",
      "topics": [
        "as.evoTSfit.OUBM"
      ]
    },
    {
      "page": "diameter_S.yellowstonensis",
      "title": "Evolutionary sequence (time-series) of phenotypic change in diameter in the lineage Stephanodiscus yellowstonensis",
      "topics": [
        "diameter_S.yellowstonensis"
      ]
    },
    {
      "page": "fit.all.univariate",
      "title": "Fit all univariate models to an evolutionary sequence (time-series).",
      "topics": [
        "fit.all.univariate"
      ]
    },
    {
      "page": "fit.mode.shift",
      "title": "Fit two models to two separate segments to an evolutionary sequence (time-series).",
      "topics": [
        "fit.mode.shift"
      ]
    },
    {
      "page": "fit.multivariate.OU",
      "title": "Fit predefined multivariate Ornstein-Uhlenbeck models to multivariate evolutionary sequence (time-series) data.",
      "topics": [
        "fit.multivariate.OU"
      ]
    },
    {
      "page": "fit.multivariate.OU.user.defined",
      "title": "Fit user-defined multivariate Ornstein-Uhlenbeck models to multivariate evolutionary sequence (time-series) data.",
      "topics": [
        "fit.multivariate.OU.user.defined"
      ]
    },
    {
      "page": "fit.multivariate.URW",
      "title": "Fit multivariate Unbiased Random Walk models to multivariate evolutionary sequence (time-series) data.",
      "topics": [
        "fit.multivariate.URW"
      ]
    },
    {
      "page": "fit.multivariate.URW.shift",
      "title": "Fit separate multivariate Unbiased Random Walk models to two different segments of a multivariate evolutionary sequence (time-series).",
      "topics": [
        "fit.multivariate.URW.shift"
      ]
    },
    {
      "page": "logL.joint.accel_decel",
      "title": "Log-likelihoods for evolutionary models",
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      "title": "Log-likelihoods for evolutionary models",
      "topics": [
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      ]
    },
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      "title": "Log-likelihoods for evolutionary models",
      "topics": [
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      ]
    },
    {
      "page": "logL.joint.multi.OUOU",
      "title": "Log-likelihoods for evolutionary models",
      "topics": [
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      ]
    },
    {
      "page": "logL.joint.multi.OUOU.user",
      "title": "Log-likelihoods for evolutionary models",
      "topics": [
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      "page": "logL.joint.multi.R",
      "title": "Log-likelihoods for evolutionary models",
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      "page": "logL.joint.OU.BM",
      "title": "Log-likelihoods for evolutionary models",
      "topics": [
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    },
    {
      "page": "logL.joint.single.R",
      "title": "Log-likelihoods for evolutionary models",
      "topics": [
        "logL.joint.single.R"
      ]
    },
    {
      "page": "logL.joint.single.R.zero.corr",
      "title": "Log-likelihoods for evolutionary models",
      "topics": [
        "logL.joint.single.R.zero.corr"
      ]
    },
    {
      "page": "logL.joint.Stasis.OU",
      "title": "Log-likelihoods for evolutionary models",
      "topics": [
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    },
    {
      "page": "logL.joint.URW.URW",
      "title": "Log-likelihoods for evolutionary models",
      "topics": [
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    },
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      "page": "loglik.surface.accel",
      "title": "Calculate the log-likelihood surface for a part of parameter space",
      "topics": [
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      ]
    },
    {
      "page": "loglik.surface.decel",
      "title": "Calculate the log-likelihood surface for a part of parameter space",
      "topics": [
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    },
    {
      "page": "loglik.surface.GRW",
      "title": "Calculate the log-likelihood surface for a part of parameter space",
      "topics": [
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      ]
    },
    {
      "page": "loglik.surface.OU",
      "title": "Calculate the log-likelihood surface for a part of parameter space",
      "topics": [
        "loglik.surface.OU"
      ]
    },
    {
      "page": "loglik.surface.OUBM",
      "title": "Calculate the log-likelihood surface for a part of parameter space",
      "topics": [
        "loglik.surface.OUBM"
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    },
    {
      "page": "loglik.surface.stasis",
      "title": "Calculate the log-likelihood surface for a part of parameter space",
      "topics": [
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      ]
    },
    {
      "page": "loglik.surface.URW",
      "title": "Calculate the log-likelihood surface for a part of parameter space",
      "topics": [
        "loglik.surface.URW"
      ]
    },
    {
      "page": "make.multivar.evoTS",
      "title": "Makes a multivariate data set of",
      "topics": [
        "make.multivar.evoTS"
      ]
    },
    {
      "page": "opt.accel.single.R",
      "title": "Fit multivariate Unbiased Random Walk with increasing (exponential accelerating) rate of change through time.",
      "topics": [
        "opt.accel.single.R"
      ]
    },
    {
      "page": "opt.accel.single.R.zero.corr",
      "title": "Fit multivariate Unbiased Random Walk model with uncorrelated trait changes and with increasing (exponential accelerating) rate of change through time.",
      "topics": [
        "opt.accel.single.R.zero.corr"
      ]
    },
    {
      "page": "opt.decel.single.R",
      "title": "Fit multivariate Unbiased Random Walk with decreasing (exponential decaying) rate of change through time.",
      "topics": [
        "opt.decel.single.R"
      ]
    },
    {
      "page": "opt.decel.single.R.zero.corr",
      "title": "Fit multivariate Unbiased Random Walk model with uncorrelated trait changes and with decreasing (exponential decaying) rate of change through time.",
      "topics": [
        "opt.decel.single.R.zero.corr"
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      "page": "opt.joint.accel",
      "title": "Fit an Unbiased Random Walk with an accelerating rate of change through time.",
      "topics": [
        "opt.joint.accel"
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    },
    {
      "page": "opt.joint.decel",
      "title": "Fit an Unbiased Random Walk with an decelerating rate of change through time.",
      "topics": [
        "opt.joint.decel"
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    },
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      "page": "opt.joint.OUBM",
      "title": "Fit an Ornstein-Uhlenbeck model with an optimum that evolves according to a Unbiased Random Walk.",
      "topics": [
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      "page": "opt.joint.URW.Stasis",
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      "topics": [
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      "page": "opt.single.R",
      "title": "Fit multivariate Unbiased Random Walk model.",
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      "page": "opt.single.R.zero.corr",
      "title": "Fit multivariate Unbiased Random Walk model with uncorrelated trait changes.",
      "topics": [
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      ]
    },
    {
      "page": "plotevoTS",
      "title": "Plot a paleoTS object",
      "topics": [
        "plotevoTS"
      ]
    },
    {
      "page": "plotevoTS.multivariate",
      "title": "Plots multivariate evolutionary sequence (time-series) data set",
      "topics": [
        "plotevoTS.multivariate"
      ]
    },
    {
      "page": "ribs_S.yellowstonensis",
      "title": "Evolutionary sequence (time-series) of phenotypic change in the number of ribs in the lineage Stephanodiscus yellowstonensis",
      "topics": [
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      "topics": [
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      "page": "sim.multi.URW",
      "title": "Simulate multivariate evolutionary sequence data that evolve according to an Unbiased Random Walk",
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      "page": "sim.OUBM",
      "title": "Simulate an Ornstein-Uhlenbeck process with optimum changing according to an unbiased random walk",
      "topics": [
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